Index

Symbols

--version agentbx command line option

_

__init__() (agentbx.AgentConfig method) (agentbx.Bundle method) (agentbx.core.base_client.BaseClient method) (agentbx.core.bundle_base.Bundle method) (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisConfig method) (agentbx.RedisManager method) (agentbx.schemas.generator.SchemaGenerator method)

A

add_asset() (agentbx.Bundle method) (agentbx.core.bundle_base.Bundle method) add_metadata() (agentbx.Bundle method) (agentbx.core.bundle_base.Bundle method) agentbx module agentbx command line option --version agentbx.core.base_client module agentbx.core.bundle_base module agentbx.core.redis_manager module agentbx.schemas.generated module

agentbx.schemas.generator module agentbx.utils.cli module agentbx.utils.data_analysis_utils module agentbx.utils.redis_utils module AgentConfig (class in agentbx) AgentConfigurationBundle (class in agentbx.schemas.generated) AgentSecurityBundle (class in agentbx.schemas.generated) analyze_bundle() (in module agentbx.utils.data_analysis_utils) analyze_complex_data() (in module agentbx.utils.data_analysis_utils) analyze_miller_array() (in module agentbx.utils.data_analysis_utils) AssetDefinition (class in agentbx.schemas.generator)

B

BaseClient (class in agentbx.core.base_client)

Bundle (class in agentbx) (class in agentbx.core.bundle_base)

C

cache_get() (agentbx.core.base_client.BaseClient method) (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisManager method) cache_set() (agentbx.core.base_client.BaseClient method) (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisManager method) calculate_checksum() (agentbx.Bundle method) (agentbx.core.bundle_base.Bundle method) (agentbx.schemas.generated.AgentConfigurationBundle method) (agentbx.schemas.generated.AgentSecurityBundle method) (agentbx.schemas.generated.CoordinateUpdateBundle method) (agentbx.schemas.generated.ExperimentalDataBundle method) (agentbx.schemas.generated.GeometryGradientDataBundle method) (agentbx.schemas.generated.GradientDataBundle method) (agentbx.schemas.generated.MacromoleculeDataBundle method) (agentbx.schemas.generated.RedisStreamsBundle method) (agentbx.schemas.generated.StructureFactorDataBundle method) (agentbx.schemas.generated.TargetDataBundle method) (agentbx.schemas.generated.XrayAtomicModelDataBundle method)

close() (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisManager method) compare_structure_factors() (in module agentbx.utils.data_analysis_utils) CoordinateUpdateBundle (class in agentbx.schemas.generated)

D

delete_bundle() (agentbx.core.base_client.BaseClient method) (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisManager method)

E

ExperimentalDataBundle (class in agentbx.schemas.generated)

F

from_env() (agentbx.AgentConfig class method) (agentbx.RedisConfig class method)

G

generate_all_models() (agentbx.schemas.generator.SchemaGenerator method) generate_asset_model() (agentbx.schemas.generator.SchemaGenerator method) generate_bundle_model() (agentbx.schemas.generator.SchemaGenerator method) generate_validators() (agentbx.schemas.generator.SchemaGenerator method) GeometryGradientDataBundle (class in agentbx.schemas.generated) get_asset() (agentbx.Bundle method) (agentbx.core.bundle_base.Bundle method) get_bundle() (agentbx.core.base_client.BaseClient method) (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisManager method)

get_bundle_metadata() (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisManager method) get_client_info() (agentbx.core.base_client.BaseClient method) get_metadata() (agentbx.Bundle method) (agentbx.core.bundle_base.Bundle method) get_size_estimate() (agentbx.Bundle method) (agentbx.core.bundle_base.Bundle method) GradientDataBundle (class in agentbx.schemas.generated)

H

has_asset() (agentbx.Bundle method) (agentbx.core.bundle_base.Bundle method)

I

inspect_bundle() (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisManager method)

inspect_bundles_cli() (in module agentbx.utils.redis_utils) is_healthy() (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisManager method)

L

list_bundles() (agentbx.core.base_client.BaseClient method) (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisManager method)

list_bundles_with_metadata() (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisManager method) load_all_schemas() (agentbx.schemas.generator.SchemaGenerator method) load_schema() (agentbx.schemas.generator.SchemaGenerator method)

M

MacromoleculeDataBundle (class in agentbx.schemas.generated) main() (in module agentbx) (in module agentbx.schemas.generator) (in module agentbx.utils.cli) module agentbx agentbx.core.base_client agentbx.core.bundle_base agentbx.core.redis_manager agentbx.schemas.generated agentbx.schemas.generator agentbx.utils.cli agentbx.utils.data_analysis_utils agentbx.utils.redis_utils

P

print_analysis_summary() (in module agentbx.utils.data_analysis_utils)

Q

quick_generate() (in module agentbx.schemas.generator)

R

RedisConfig (class in agentbx) RedisManager (class in agentbx) (class in agentbx.core.redis_manager)

RedisStreamsBundle (class in agentbx.schemas.generated) remove_asset() (agentbx.Bundle method) (agentbx.core.bundle_base.Bundle method)

S

SchemaDefinition (class in agentbx.schemas.generator) SchemaGenerator (class in agentbx.schemas.generator) store_bundle() (agentbx.core.base_client.BaseClient method) (agentbx.core.redis_manager.RedisManager method) (agentbx.RedisManager method)

StructureFactorDataBundle (class in agentbx.schemas.generated)

T

TargetDataBundle (class in agentbx.schemas.generated)

V

validate() (agentbx.Bundle method) (agentbx.core.bundle_base.Bundle method) validate_agent_definition() (agentbx.schemas.generated.AgentConfigurationBundle method) validate_agent_registration() (agentbx.schemas.generated.AgentSecurityBundle method) validate_bfactor_gradients() (agentbx.schemas.generated.GradientDataBundle method) validate_bulk_solvent_params() (agentbx.schemas.generated.XrayAtomicModelDataBundle method) validate_capabilities() (agentbx.schemas.generated.AgentConfigurationBundle method) (agentbx.schemas.generated.AgentSecurityBundle method) validate_consumer_groups() (agentbx.schemas.generated.RedisStreamsBundle method) validate_coordinate_gradients() (agentbx.schemas.generated.GradientDataBundle method) validate_coordinates() (agentbx.schemas.generated.GeometryGradientDataBundle method) validate_crystal_symmetry() (agentbx.schemas.generated.MacromoleculeDataBundle method) validate_dependencies() (agentbx.schemas.generated.AgentConfigurationBundle method) (agentbx.schemas.generated.AgentSecurityBundle method) (agentbx.schemas.generated.CoordinateUpdateBundle method) (agentbx.schemas.generated.ExperimentalDataBundle method) (agentbx.schemas.generated.GeometryGradientDataBundle method) (agentbx.schemas.generated.GradientDataBundle method) (agentbx.schemas.generated.MacromoleculeDataBundle method) (agentbx.schemas.generated.RedisStreamsBundle method) (agentbx.schemas.generated.StructureFactorDataBundle method) (agentbx.schemas.generated.TargetDataBundle method) (agentbx.schemas.generated.XrayAtomicModelDataBundle method) validate_f_calc() (agentbx.schemas.generated.StructureFactorDataBundle method)

validate_f_mask() (agentbx.schemas.generated.StructureFactorDataBundle method) validate_f_model() (agentbx.schemas.generated.StructureFactorDataBundle method) validate_f_obs() (agentbx.schemas.generated.ExperimentalDataBundle method) validate_geometric_gradients() (agentbx.schemas.generated.GeometryGradientDataBundle method) validate_likelihood_parameters() (agentbx.schemas.generated.TargetDataBundle method) validate_message_schemas() (agentbx.schemas.generated.RedisStreamsBundle method) validate_miller_indices() (agentbx.schemas.generated.XrayAtomicModelDataBundle method) validate_model_manager() (agentbx.schemas.generated.MacromoleculeDataBundle method) validate_occupancy_gradients() (agentbx.schemas.generated.GradientDataBundle method) validate_pdb_hierarchy() (agentbx.schemas.generated.MacromoleculeDataBundle method) validate_permissions() (agentbx.schemas.generated.AgentSecurityBundle method) validate_r_factors() (agentbx.schemas.generated.TargetDataBundle method) validate_r_free_flags() (agentbx.schemas.generated.ExperimentalDataBundle method) validate_restraint_counts() (agentbx.schemas.generated.GeometryGradientDataBundle method) validate_restraint_energies() (agentbx.schemas.generated.GeometryGradientDataBundle method) validate_scale_factors() (agentbx.schemas.generated.StructureFactorDataBundle method) validate_security_policies() (agentbx.schemas.generated.AgentConfigurationBundle method) validate_sigmas() (agentbx.schemas.generated.ExperimentalDataBundle method) validate_stream_configuration() (agentbx.schemas.generated.RedisStreamsBundle method) validate_target_gradients_wrt_sf() (agentbx.schemas.generated.TargetDataBundle method) validate_target_value() (agentbx.schemas.generated.TargetDataBundle method) validate_whitelisted_modules() (agentbx.schemas.generated.AgentSecurityBundle method) validate_xray_structure() (agentbx.schemas.generated.MacromoleculeDataBundle method) (agentbx.schemas.generated.XrayAtomicModelDataBundle method) ValidationRule (class in agentbx.schemas.generator)

W

watch_for_changes() (in module agentbx.schemas.generator)

WorkflowPattern (class in agentbx.schemas.generator) write_generated_models() (agentbx.schemas.generator.SchemaGenerator method)

X

XrayAtomicModelDataBundle (class in agentbx.schemas.generated)